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Multiplex immunofluorescence labeling of human melanoma specimens was performed with the Pheno Multicolor Immunofluorescence Detection Kit according to the manufacturer’s instructions.

Multiplex Fluorescence Immunohistochemistry for Early-Stage Melanoma Patient Stratification and Therapy Selection

In the era of precision oncology, clinicians must choose the optimal therapy for each patient from a growing armamentarium that includes chemotherapy, radiotherapy, immunotherapy and targeted agents. Consequently, reliable prediction of recurrence risk and assessment of therapeutic outcome have become central concerns for the medical community.

At the May 2024 ASCO Annual Meeting, NeraCare—a diagnostic laboratory dedicated to melanoma prognostics—presented a multicenter, prospective–retrospective clinical trial that applied a seven-target immunohistochemistry (IHC) assay designated “Immunoprint” to accurately stratify patients with stage IB/IIA cutaneous melanoma into high- and low-risk recurrence groups.

In the multicenter MELARISK-001 study, 382 patients with IB/IIA cutaneous melanoma were enrolled and subjected to seven-target IHC on FFPE tissue sections; 247 (65 %) were IB and 135 (35 %) IIA, all sentinel-node negative. The assay classified 212 (55 %) as high-risk and 170 (45 %) as low-risk for recurrence. Follow-up demonstrated significantly inferior survival in the high-risk cohort, validating the predictive accuracy. Patients allocated to the high-risk group are now eligible for therapies currently reserved for advanced-stage melanoma, offering the potential to delay disease progression.

On the strength of these data, Akoya Biosciences (NASDAQ: AKYA) signed an exclusive May 2024 agreement with NeraCare to migrate Immunoprint onto Akoya’s multiplex immunofluorescence PhenoImager HT platform, integrating traditional multi-target IHC with single-slide, multi-marker mIF imaging for early-stage melanoma risk assessment and therapy selection.

Building on these data, Akoya Biosciences (NASDAQ: AKYA) signed an exclusive agreement with NeraCare in May 2024 to port Immunoprint onto Akoya’s multiplex-immunofluorescence (mIF) PhenoImager HT platform, uniting traditional multi-target IHC with single-slide, multi-marker imaging for early-stage melanoma risk assessment and therapy selection.

Recent studies demonstrate that mIF-based biomarkers outperform conventional IHC by:

1. Conserving tissue while synchronously quantifying multiple targets 

2. Mapping co-positive cellular phenotypes 

3. Preserving spatial architecture to reveal cell–cell proximity metrics 

4. Converting subjective scoring into reproducible, whole-slide quantitative data

These advantages open new avenues for therapy-response prediction and prognostic assay development with minimal specimen requirements.

At the 113th USCAP Annual Meeting (March 2024) and the 115th AACR Annual Meeting (2024), PhenoVision—together with Peking University Cancer Hospital—presented data demonstrating that multiplex-immunofluorescence-based co-detection of multiple targets effectively predicts response and prognosis in melanoma patients receiving immune-checkpoint therapy, underscoring its clinical utility.

PhenoVision offers an end-to-end solution encompassing: Custom mIF panel design、-Standardized experimental execution、Spatial-phenotype data analytics.

The company has established a rigorously validated technical pipeline that ensures accuracy and reproducibility for translational applications. Its proprietary PhenoExp Spatial-Phenotyping Platform applies AI-driven workflows to extract tissue-architecture, cell-phenotype, and spatial-distance metrics from mIF images, enabling patient stratification and therapy-response assessment and providing robust technological support for the clinical translation of spatial multi-omics.

References:

On March 17, 2025, the Wang-Peng research group at the School of Life Science and Technology, ShanghaiTech University, in collaboration with the team of Professor Kong Yan at Peking University Cancer Hospital and other institutions, published a landmark study in Cell delineating the activation mechanism of the LAG-3 immune-checkpoint receptor. The work demonstrates, for the first time, that ubiquitination of LAG-3 upon ligand engagement exerts a positive regulatory effect on its inhibitory function, offering novel precision-oncology strategies and candidate biomarkers for tumor immunotherapy.

1.Research Highlights

Rapid, non-proteolytic poly-ubiquitination of LAG3 upon ligand binding

Within minutes of ligand engagement, lysine-498 in the LAG3 cytoplasmic tail undergoes robust poly-ubiquitination that persists ≥30 min without inducing protein degradation, thereby stabilizing the activated receptor.

Ubiquitination releases the membrane-sequestered FSALE motif and licenses inhibitory signaling

In resting T cells the FSALE helix is embedded in the plasma membrane; ubiquitin-dependent conformational un tethering exposes signaling residues required for recruitment of SHP-1/2 phosphatases and initiation of negative regulation.

LAG3 ubiquitination is indispensable for suppression of anti-tumor immunity in vivo

CRISPR-engineered ubiquitination-deficient LAG3-K498R mutants fail to restrain T-cell expansion, accelerate tumor rejection in syngeneic mouse models, and correlate with diminished ubiquitin signal in human tumor-infiltrating lymphocytes.

LAG3–CBL co-expression predicts response to LAG3 blockade

Multiplex immunofluorescence of melanoma biopsies revealed that patients whose tumors co-express LAG3 and CBL-family E3 ligases exhibit significantly higher objective response rates and prolonged progression-free survival upon anti-LAG3 therapy, establishing a companion diagnostic biomarker for precision immunotherapy.

2.Applications of mLF/mIHC Technology in LAG3 Research

In this study, multiplex immunofluorescence (Pheno 7-color kit, PVB2002) was employed to map LAG3 and CBL family proteins in tumor tissue, confirming their differential distribution among patients with PR, SD and PD and allowing direct visualization of the findings.

Tumor microenvironment dissection 

mIF/mIHC simultaneously quantified LAG3 and CBL expression and delineated their spatial topography within the TME, enabling identification of patients with high LAG3/CBL co-expression who are most likely to benefit from LAG3-targeted therapy.

Immune-cell infiltration analysis 

By co-staining LAG3, CBL and lineage markers for CD8⁺ T cells, CD4⁺ T cells and macrophages, mIF/mIHC revealed the geographic overlap between LAG3/CBL-high regions and immune infiltrates, providing spatial evidence for LAG3-mediated immunosuppression.

Efficacy-prediction model construction 

Integrating mIF/mIHC-derived LAG3/CBL co-expression data with clinical outcomes, we constructed a predictive model. Expression changes in LAG3 and CBL before and after therapy were tracked by mIF/mIHC, supplying direct evidence of response and facilitating multidimensional treatment optimization.

In this study, multiplex immunofluorescence (Pheno 7-color kit, PVB2002) was employed to map LAG3 and CBL family proteins in tumor tissue, confirming their differential distribution among patients with PR, SD and PD and allowing direct visualization of the findings.

About PhenoVision

Beijing PhenoVision Biotechnology Co., Ltd. (PhenoVision), headquartered in Beijing, is dedicated to spatial visualization of intact tissues and provides one-stop spatial biology solutions for multiple application scenarios. Integrating world-class pathology platforms with extensive medical resources, the company unites R&D, laboratory services, and assay development under one roof to advance precision medicine and translational science. By coupling internationally leading technologies from Akoya, Visiopharm, and Leica with in-house innovation and AI-based data-analysis apps, PhenoVision is building a premier domestic platform for spatial-omics testing and bioinformatics, delivering comprehensive support from applied products to drug discovery and life-science research.

Address: 3rd Floor, Unit 1, Building 15, Jiajie·Box Enterprise Park, Daxing District, Beijing, China 

Email: [email protected]

Tel: +86-010-6787-3050 

References:

Colorectal cancer (CRC) has long been a focal point in the quest for precision oncology. This common gastrointestinal malignancy carries one of the highest global incidences and mortality rates. For patients with stage III microsatellite-stable (MSS) disease, the ever-present threat of relapse looms like a sword of Damocles; accurately predicting recurrence and tailoring individualized treatment and surveillance strategies are therefore pivotal to improving outcomes.

Background

This study retrospectively analyzed archived FFPE samples from 17 patients with stage III MSS CRC, including 11 samples from relapsed patients and 6 samples from non-relapsed patients, aiming to explore their immune cell characteristics and their correlation with post-chemotherapy relapse. A PN 6-Plex detection kit (PhenoVision Bio Co., Ltd) was used for multiplex immunofluorescence (mIF) staining targeting macrophages, T cells, B cells, as well as panCK, PD-1, and PD-L1. After scanning the 17 stained slides, a pathologist identified the tumor areas based on H&E staining of consecutive sections from each sample. The PhenoVision mIF AI analysis system (trained on the Oncotopix Discovery system (Visiopharm)) was used to analyze non-tumor areas, tumor invasive margins (IM, defined as the range of 360μm inside and outside the tumor boundary, totaling 720μm), tumor parenchyma, and stromal regions.

Experimental Procedures

1.Objective 

Colorectal cancer (CRC) is a highly prevalent and lethal gastrointestinal malignancy. Stage III microsatellite-stable (MSS) CRC still carries a substantial post-chemotherapy recurrence rate. Although the immune microenvironment is intimately linked to relapse, conventional assays cannot resolve the fine-grained topography of immune-cell subpopulations, precluding accurate early-risk stratification and therapy tailoring. 

Prior studies have centered on tumor-intrinsic genomic alterations and isolated biomarkers; the spatial distribution of immune-cell subtypes within the tumor core and invasive margin remains insufficiently explored. Here, we focused on PD-1⁻/CD20⁺, CD3⁺, and PD-1⁻/CD3⁺ subsets to identify novel recurrence predictors and refine clinical decision-making.

2.Procedures 

The Wang–Hu team at the Second Affiliated Hospital of Harbin Medical University, in collaboration with PhenoVision, employed the PVB-2003 multiplex immunofluorescence kit and the PhenoVision mIF AI platform to simultaneously enumerate and map T cells, macrophages, B cells, tumor cells, PD-1⁺, and PD-L1⁺ cells on single FFPE sections, quantifying their spatial neighborhood relationships.

This study rigorously selected and enrolled archived FFPE samples from 17 stage III MSS colon cancer patients, stratified by recurrence status into 11 recurrent and 6 non-recurrent cases. Utilizing state-of-the-art multiplex immunofluorescence (mIF) coupled with the PhenoVision mIF AI analytical platform, we precisely mapped and quantified target immune-cell subtypes within tumor islands, stromal compartments, and the tumor-invasive margin. By comparing density and proportional differences of these subsets between recurrent and non-recurrent cohorts, we delineated immune signatures potentially associated with disease relapse.

3.Results 

The tumor microenvironment differed significantly between recurrent and non-recurrent patients. 

– Within the tumor bed, PD-1⁻/CD20⁺ cells in the stroma were markedly higher in the non-recurrent cohort (6.64 % vs 2.58 %, p = 0.026). 

– PD-L1⁺/CD3⁺ cells also showed a significant inter-group difference (p = 0.01). 

In the invasive-margin (IM) analysis, the PD-1⁻/CD20⁺ fraction rose from 0.68 % in the tumor core to 2.21 % at the IM in recurrent cases, whereas CD3⁺ and PD-1⁻/CD3⁺ subsets displayed the converse, IM-enriched pattern in non-recurrent cases. 

These data indicate that the topography of PD-1⁻/CD20⁺ cells is tightly linked to relapse risk and may serve as a predictive biomarker. The selective accumulation of this subset in the IM of non-recurrent patients suggests that enhancing its infiltration into the tumor nest could improve outcomes, although this therapeutic concept requires further investigation.

4.Conclusions & Outlook 

This study provides a comprehensive, high-resolution map of immune-cell topography in stage III MSS colon cancer and establishes a robust association between PD-1⁻/CD20⁺ distribution and recurrence. The identified signatures are readily translatable into clinical assays for risk stratification and tailored surveillance. Moreover, therapeutic strategies aimed at increasing PD-1⁻/CD20⁺ and related immune subsets within tumor tissue warrant evaluation in larger, multicentric trials to refine precision management and prolong survival in this high-risk population.

Session Category: Tumor Biology 

Session Title: Multi-Omics and the Predictive Power of the Tumor Microenvironment 

Location: Poster Area 2 

Poster Board Number: 19  Published Abstract Number: 6478

About PhenoVision

Beijing PhenoVision Biotechnology Co., Ltd. (PhenoVision), headquartered in Beijing, is dedicated to spatial visualization of intact tissues and provides one-stop spatial biology solutions for multiple application scenarios. Integrating world-class pathology platforms with extensive medical resources, the company unites R&D, laboratory services, and assay development under one roof to advance precision medicine and translational science. By coupling internationally leading technologies from Akoya, Visiopharm, and Leica with in-house innovation and AI-based data-analysis apps, PhenoVision is building a premier domestic platform for spatial-omics testing and bioinformatics, delivering comprehensive support from applied products to drug discovery and life-science research.

Address: 3rd Floor, Unit 1, Building 15, Jiajie·Box Enterprise Park, Daxing District, Beijing, China 

Email: [email protected]

Tel: +86-010-6787-3050